6.1.1.1.1.2. pytfa.analysis.manipulation

6.1.1.1.1.2.1. Module Contents

6.1.1.1.1.2.1.1. Functions

apply_reaction_variability(tmodel, va, inplace=True)	Applies the VA results as bounds for the reactions of a cobra_model
apply_generic_variability(tmodel, va, inplace=True)	Reactions a dealt with cobra, but the other variables added use pytfa's
apply_directionality(tmodel, solution, inplace=True)	Takes a flux solution and transfers its reaction directionality as

pytfa.analysis.manipulation.apply_reaction_variability(tmodel, va, inplace=True)

Applies the VA results as bounds for the reactions of a cobra_model :param inplace: :param tmodel: :param va: :return:

pytfa.analysis.manipulation.apply_generic_variability(tmodel, va, inplace=True)

Reactions a dealt with cobra, but the other variables added use pytfa’s interface: the class GenericVariable. We use a different method to apply variability directly in the solver

Parameters

• tmodel –

• va –

• inplace –

Returns

pytfa.analysis.manipulation.apply_directionality(tmodel, solution, inplace=True)

Takes a flux solution and transfers its reaction directionality as constraints for the cobra_model

Parameters

• inplace –

• tmodel –

• solution –

Returns