6.1.1.4.1.6. pytfa.optim.relaxation
¶
Relaxation of models with constraint too tight
6.1.1.4.1.6.1. Module Contents¶
6.1.1.4.1.6.1.1. Functions¶
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6.1.1.4.1.6.1.2. Attributes¶
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- pytfa.BIGM¶
- pytfa.BIGM_THERMO¶
- pytfa.BIGM_DG¶
- pytfa.BIGM_P¶
- pytfa.EPSILON¶
- pytfa.relax_dgo_gurobi(model, relax_obj_type=0)¶
- pytfa.relax_dgo(tmodel, reactions_to_ignore=(), solver=None, in_place=False)¶
- Parameters
t_tmodel (pytfa.thermo.ThermoModel:) –
reactions_to_ignore – Iterable of reactions that should not be relaxed
solver – solver to use (e.g. ‘optlang-glpk’, ‘optlang-cplex’, ‘optlang-gurobi’
- Returns
a cobra_model with relaxed bounds on standard Gibbs free energy
- pytfa.relax_lc(tmodel, metabolites_to_ignore=(), solver=None)¶
- Parameters
metabolites_to_ignore –
in_tmodel (pytfa.thermo.ThermoModel:) –
min_objective_value –
- Returns