6.1.1.5.1.4. pytfa.redgem.redgem¶
Model class
6.1.1.5.1.4.1. Module Contents¶
6.1.1.5.1.4.1.1. Classes¶
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6.1.1.5.1.4.1.2. Functions¶
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- class redgem.RedGEM(gem, parameters_path, inplace=False)¶
- read_parameters(self, parameters_path)¶
- fill_default_params(self)¶
- set_solver(self)¶
- run(self)¶
- _extract_inorganics(self)¶
Extract inorganics from self._gem based on their formula
- Returns
list of inorganics metabolites
- redgem.add_lump(model, lump_object, id_suffix='')¶