- parallel_variability_analysis() (in module pytfa)
- petersen_linearization() (in module pytfa)
- plot_fva_tva_comparison() (in module pytfa)
- plot_histogram() (in module pytfa)
- plot_thermo_displacement_histogram() (in module pytfa)
- PosSlackLC (class in pytfa)
- PosSlackVariable (class in pytfa)
- prefix (pytfa.analysis.DeltaG attribute)
- (pytfa.analysis.ForbiddenProfile attribute)
- (pytfa.analysis.ForwardUseVariable attribute)
- (pytfa.BackwardDeltaGCoupling attribute)
- (pytfa.BackwardDirectionCoupling attribute)
- (pytfa.BackwardUseVariable attribute)
- (pytfa.BinaryVariable attribute)
- (pytfa.ChebyshevRadius attribute)
- (pytfa.DeltaG attribute)
- (pytfa.DeltaGErr attribute)
- (pytfa.DeltaGstd attribute)
- (pytfa.DisplacementCoupling attribute)
- (pytfa.ForbiddenProfile attribute)
- (pytfa.ForwardBackwardUseVariable attribute)
- (pytfa.ForwardDeltaGCoupling attribute)
- (pytfa.ForwardDirectionCoupling attribute)
- (pytfa.ForwardUseVariable attribute)
- (pytfa.GeneConstraint attribute)
- (pytfa.GenericConstraint attribute)
- (pytfa.GenericVariable attribute)
- (pytfa.GeneVariable attribute)
- (pytfa.LinearizationConstraint attribute)
- (pytfa.LinearizationVariable attribute)
- (pytfa.LogConcentration attribute)
- (pytfa.MetaboliteConstraint attribute)
- (pytfa.MetaboliteVariable attribute)
- (pytfa.ModelConstraint attribute)
- (pytfa.ModelVariable attribute)
- (pytfa.NegativeDeltaG attribute)
- (pytfa.NegSlackLC attribute)
- (pytfa.NegSlackVariable attribute)
- (pytfa.optim.BackwardDeltaGCoupling attribute)
- (pytfa.optim.BackwardDirectionCoupling attribute)
- (pytfa.optim.BackwardUseVariable attribute), [1]
- (pytfa.optim.BinaryVariable attribute)
- (pytfa.optim.DeltaG attribute)
- (pytfa.optim.DeltaGErr attribute)
- (pytfa.optim.DeltaGstd attribute), [1]
- (pytfa.optim.DisplacementCoupling attribute)
- (pytfa.optim.ForbiddenProfile attribute)
- (pytfa.optim.ForwardBackwardUseVariable attribute)
- (pytfa.optim.ForwardDeltaGCoupling attribute)
- (pytfa.optim.ForwardDirectionCoupling attribute)
- (pytfa.optim.ForwardUseVariable attribute), [1]
- (pytfa.optim.GeneConstraint attribute)
- (pytfa.optim.GenericConstraint attribute), [1]
- (pytfa.optim.GenericVariable attribute), [1]
- (pytfa.optim.GeneVariable attribute)
- (pytfa.optim.LinearizationConstraint attribute)
- (pytfa.optim.LinearizationVariable attribute)
- (pytfa.optim.LogConcentration attribute), [1]
- (pytfa.optim.MetaboliteConstraint attribute)
- (pytfa.optim.MetaboliteVariable attribute)
- (pytfa.optim.ModelConstraint attribute)
- (pytfa.optim.ModelVariable attribute)
- (pytfa.optim.NegativeDeltaG attribute), [1]
- (pytfa.optim.NegSlackLC attribute), [1]
- (pytfa.optim.NegSlackVariable attribute), [1]
- (pytfa.optim.PosSlackLC attribute), [1]
- (pytfa.optim.PosSlackVariable attribute), [1]
- (pytfa.optim.ReactionConstraint attribute)
- (pytfa.optim.ReactionVariable attribute)
- (pytfa.optim.SimultaneousUse attribute)
- (pytfa.optim.ThermoDisplacement attribute)
- (pytfa.PosSlackLC attribute)
- (pytfa.PosSlackVariable attribute)
- (pytfa.ReactionConstraint attribute)
- (pytfa.ReactionVariable attribute)
- (pytfa.redgem.lumpgem.FluxKO attribute)
- (pytfa.redgem.lumpgem.UseOrKOFlux attribute)
- (pytfa.redgem.lumpgem.UseOrKOInt attribute)
- (pytfa.SimultaneousUse attribute)
- (pytfa.thermo.BackwardDeltaGCoupling attribute)
- (pytfa.thermo.BackwardDirectionCoupling attribute)
- (pytfa.thermo.BackwardUseVariable attribute)
- (pytfa.thermo.DeltaG attribute)
- (pytfa.thermo.DeltaGstd attribute)
- (pytfa.thermo.DisplacementCoupling attribute)
- (pytfa.thermo.ForwardDeltaGCoupling attribute)
- (pytfa.thermo.ForwardDirectionCoupling attribute)
- (pytfa.thermo.ForwardUseVariable attribute)
- (pytfa.thermo.LogConcentration attribute)
- (pytfa.thermo.MetaboliteConstraint attribute)
- (pytfa.thermo.MetaboliteVariable attribute)
- (pytfa.thermo.NegativeDeltaG attribute)
- (pytfa.thermo.ReactionConstraint attribute)
- (pytfa.thermo.ReactionVariable attribute)
- (pytfa.thermo.SimultaneousUse attribute)
- (pytfa.thermo.ThermoDisplacement attribute)
- (pytfa.ThermoDisplacement attribute)
|
- prepare() (pytfa.thermo.ThermoModel method)
- print_info() (pytfa.thermo.ThermoModel method)
- printLP() (in module pytfa)
-
pytfa
- module, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24]
-
pytfa.analysis
-
pytfa.analysis.chebyshev
-
pytfa.analysis.manipulation
-
pytfa.analysis.sampling
-
pytfa.analysis.variability
-
pytfa.core
-
pytfa.io
-
pytfa.io.base
-
pytfa.io.dict
-
pytfa.io.enrichment
-
pytfa.io.json
-
pytfa.io.plotting
-
pytfa.io.viz
-
pytfa.optim
-
pytfa.optim.config
-
pytfa.optim.constraints
-
pytfa.optim.debugging
-
pytfa.optim.meta
-
pytfa.optim.reformulation
-
pytfa.optim.relaxation
-
pytfa.optim.utils
-
pytfa.optim.variables
-
pytfa.redgem
-
pytfa.redgem.debugging
-
pytfa.redgem.lumpgem
-
pytfa.redgem.network_expansion
-
pytfa.redgem.redgem
-
pytfa.redgem.utils
-
pytfa.thermo
-
pytfa.thermo.equilibrator
-
pytfa.thermo.metabolite
-
pytfa.thermo.reaction
-
pytfa.thermo.std
-
pytfa.thermo.tmodel
-
pytfa.thermo.utils
-
pytfa.utils
-
pytfa.utils.logger
-
pytfa.utils.numerics
-
pytfa.utils.str
|